Signaling Analysis and Visualization 2.5

Signaling Analysis and Visualization 2.5 Screenshot The discovery process of cellular signal transduction pathways has reached a stage where pathways are combined to form large networks of interactions.

Developer:   Mount Sinai School of Medicine Iyengar Lab
      software by Mount Sinai School of Medicine Iyengar Lab →
Price:  0.00
License:   Freeware
File size:   0K
Language:   
OS:   Windows Vista (?)
Rating:   0 /5 (0 votes)

The discovery process of cellular signal transduction pathways has reached a stage where pathways are combined to form large networks of interactions.

Viewing protein-protein and ligand-protein interactions as graphs (networks) where bio-molecules are represented as vertices (nodes) and interactions are represented as edges (links) is a useful method for consolidating and organizing experimental evidence from multiple sources to achieve system-level understanding of how pathways control cellular phenotypes.

The emergence of datasets of large-scale networks made of cellular components and interactions provides the opportunity for statistical topological analysis and the challenge of network visualization. Graph-theory methods applied to complex systems in other fields is also applied to analyze bio-molecular cellular networks.

SAVI is a desktop program that implements standard methods to compute the clustering, diameter, connectivity distribution and detecting and visualizing network motifs.

Additionally, SAVI generates a complete website from network datasets in text format. SAVI contains a tool called PathwayGenerator. This tool creates signaling connection maps as web pages from large datasets of interactions. SAVI can also generate a network of interactions when given a list of human gene names.

Requirements
  • 256 MB of RAM,
  • 1 GB of free hard disk space








    Signaling Analysis and Visual

    tags analysis and  and interactions  are represented  

    Signaling Analysis and Visualization 2.5 screenshot


    Download Signaling Analysis and Visualization 2.5

     Download Signaling Analysis and Visualization 2.5


    Authors software

    SigInt 1.0 SigInt 1.0
    Mount Sinai School of Medicine Iyengar Lab

    SigInt is a command-line software utility that can be used to find and rank mammalian proteins/genes that specifically and significantly interact with a list of proteins/genes in context of a background mammalian signalome and interactome networks.

    Signaling Analysis and Visualization 2.5 Signaling Analysis and Visualization 2.5
    Mount Sinai School of Medicine Iyengar Lab

    The discovery process of cellular signal transduction pathways has reached a stage where pathways are combined to form large networks of interactions.

    Genes2Networks 1.0 Genes2Networks 1.0
    Mount Sinai School of Medicine Iyengar Lab

    Genes2Networks is a command-line software utility that can be used to place lists of mammalian genes in the context of a background mammalian signalome and interactome networks.

    Similar software

    Signaling Analysis and Visualization 2.5 Signaling Analysis and Visualization 2.5
    Mount Sinai School of Medicine Iyengar Lab

    The discovery process of cellular signal transduction pathways has reached a stage where pathways are combined to form large networks of interactions.

    Pathways Planner 3.2-B Pathways Planner 3.2-B
    Freelance Wizards Incorporated

    Pathways Personal Life Planner is a useful application that will help you to set goals for a more satisfying life, manage your time, and manage your personal finances.

    Advanced Pathway Painter 2.31 Advanced Pathway Painter 2.31
    GSA

    Advanced Pathway Painter is free tool that helps you visualize pathways.

    Cellular Automata Viewer 2.0 Cellular Automata Viewer 2.0
    Jean-Philipe Rennard

    Cellular Automata Viewer application is designed to be a cellular automata manager.

    Signal Analyze Toolkit 2.20 Signal Analyze Toolkit 2.20
    He Lingsong

    Signal Analyze Toolkit is a FFT based signal analyzing application.

    CABAReT Stage 5.1.0 CABAReT Stage 5.1.0
    CABAReT Solutions AG

    CABAReT Stage CABAReT Stage is a JAVA based platform, which will offer many useful functions for your PDF documents.

    Discovery Wizard for SharePoint freeware Discovery Wizard for SharePoint freeware
    Quest Software

    Quest Discovery Wizard for SharePoint is an application that automatically identifies all the SharePoint servers, site collections and sites within your environment through an easy-to-use discovery wizard.

    Trailfire Toolbar 1.0.978 Trailfire Toolbar 1.0.978
    Trailfire

    Trailfire offers a unique new method for commentary, web navigation and social discovery.

    Cellular Folders 1.0 Cellular Folders 1.0
    Luis Maldonado Hernandez

    Cellular Folders is a free and beautiful set that contains 5 icons.

    Function generator 1.0 Function generator 1.0
    Refik Hadzialic

    Function or signal generator is used to generate a signal from your sound card! A sine wave or a digital one.

    Other software in this category

    Smoke Attack 1.0 Smoke Attack 1.0
    Blackpencil Entertainment AG

    In this smoking-risk awareness game from the swiss federal office of public health, you are navigating the caracter "Oxy" through offices.

    Quiz of the States 1.0 Rev. 2 Quiz of the States 1.0 Rev. 2
    States Liberty Party

    Makes learning enjoyable.

    AIDA 4.3a AIDA 4.3a
    AIDA

    AIDA will allow users the chance to easily simulate the effects of changes in insulin and diet on the blood glucose profiles of various example 'virtual diabetic patients'.

    nVIDIA EarthViewer 3D 1.4.2 nVIDIA EarthViewer 3D 1.4.2
    nVIDIA

    EarthViewer 3D harnesses the power of NVIDIA GPUs.

    ViziFlow 2.3 ViziFlow 2.3
    John Beeteson

    ViziFlow is a program that allows the fast fluid flow modeling, and the visualization of pressure distribution and streamlines.